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Welcome to the chapter on 
sponge and animal phylogeny.


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 In this chapter we are going to talk about 
the fact that sponge phylogeny remains a


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very disputable subject and we're going to
 talk about the fact how important it is for


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 people interested in evolution of animals or
 evolutionary origin of animals to understand


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 what really is the phylogentic 
position of sponges.


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We are going to start by going back to 
Ernst Haeckel's lament from 1870 when


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 he said that it is really amazing how much 
doubt there is to the true nature of sponges, 


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and as I said at the introduction when Ernst 
Haeckel talks about the most recent times 


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while he writes it in the 19th century, 
here at the beginning of the 21st century 


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we are still actually feeling as 
much in doubt as Haeckel and his 


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colleagues felt 150 years ago.

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So why is that? Well, to be quite 
honest, Haeckel wasn't in doubt.


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 He looked at sponges, he looked at corals,
cnidarians about which we have learnt in


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the other modules, and he said that it's 
actually very simple: if you compare those 


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two body plans, you are going to find 
that there is fundamental agreement of 


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the sponges and corals, that they 
are always built from two layers,


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the endoderm and the ectoderm.

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And he also mentioned that there is this 
major opening at the apical part of the body, 


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which is the osculum in sponges
and the mouth in the coral polyps


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and quite recently we are not very-
 in recent times we are not very much


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 disputing the fact that the innermost layer
 of cnidarian polyps is homologous to the 


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endoderm and the mesoderm of other 
animals. So the transition between cnidarians 


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and bilatarians with this example 
of a vertebrate shark, here, is quite 


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 easy to understand, but the disputable 
part is the relationship between sponge


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 and cnidarian body plans.

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So,

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Haeckel wasn't confused at all. He said 
sponges and cnidarians basically have 


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the same body plan. But Saville Kent, 
another naturalist from that time,


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looked at the cell types, and especially 
at the choanocytes that we have talked 


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about in the previous 
chapter and he said, look


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choanocytes and choanoflagellates look 
so similar. He quoted his colleague 


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James Clark who a few years earlier said

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that there is discovered choanoflagellates
and talked about the collars and the flagella


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and about the similarity of choanocytes
and choanoflagellates, and Saville Kent


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 in 1880 said that his interpretation of

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animal and protistan relationships is
 completely opposite to what is advocated 


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by Professor Haeckel.

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So what Saville-Kent following
 James Clark believed 


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is that sponges in fact are protists.

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 He said that by process of evolution there
 is substantial reason to presume that 


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sponges are primarily derived 
from choanoflagellates. 


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So this is a very different view.

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 He didn't think sponges were closely 
related or aligned in any way 


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with cnidarians, which he believed 
would be closely related to other animals.


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He thought that sponges are an independent 
lineage of multicellularity derived straight


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from choanoflagellate-like ancestors.

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Now, this was the 19th century. Surely 
we have come a long way from this time.


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Well, in the end of the 20th century people
 started building phylogenies using individual


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 genes and what has been found by Wainright
and Cavalier-Smith and their colleagues is 


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that choanoflagellates clearly are the nearest
 relative to animals, so that was important. 


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But also they found that sponges are indeed 
closer related to animals than they are to 


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choanoflagellates, so the established
 view from the end of the 20th century


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Is that sponges form animals together with
 all those other non-sponge animals and 


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choanoflagellates are the sister group, the 
nearest relatives of animals that are not animals.


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Does that mean that the choanoflagllate
 and choanocyte similarity doesn't matter?


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 Well, it probably matters because it suggests
 that if sponges are the first animals 


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to evolve, then perhaps the cell 
type, the choanocyte cell type


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 is directly derived from the choanoflag-
ellate situation, but it seems that this 


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is not something that we 
can really take for granted.


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So when people started building phylogenies
 built on whole genomes from individual 


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genes, they produced what I like to
 call a forest of phylogentic trees. 


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So for example, Casey Dunn and colleagues
 in 2008 published the very interesting paper


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 that steered a lot of our thinking about 
animal evolution, suggesting that in fact 


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it is not the sponges that are the first 
animals that have evolved or they are 


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not the first extant lineage of animals, 
but the ctenophores in fact are the 


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sister group to all other animals, and 
sponges evolved later than ctenophores.


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 Remember ctenophores are rather complex
 animals, quite similar to cnidarians with 


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muscle and a nervous system, so that
 was a bit disconcerting for a lot of us.


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But quite soon after that, there was another 
paper that said something completely different.


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Well, they didn't address the position of 
ctenophores, but they said that sponges 


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are not monophyletic. So those calcareous
sponges like <i>Sycon ciliatum</i> and siliceous 


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sponges like for example <i>Halisarca </i>that
 we talked about, they are independent 


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lineages, with the calcareous sponges 
being closer related to other animals 


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than the siliceous sponges. Now that was
 really interesting and completely different 


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to what we thought before.

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And again in 2015 there was a paper 
by a group including David Pisani, 


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 that was published in another high-profile 
journal that said actually ctenophores are


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 not the sister group to all 
animals, sponges are.


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But of course we didn't wait long for another
 paper in 2017 that said actually ctenophores


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 are the sister group to all other 
animals and sponges evolved later.


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And then there was a bit of a back and forth. 
Turns out that while the majority of recently


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 published genome-based phylogenies 
suggest that sponges are the sister group 


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to all other animals, and ctenophores
evolved later, this doesn't appear to be 


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really established with 100% certainty.
 But you might ask, why would we care? 


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Does it matter if sponges are 
monophyletic or paraphyletic? 


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Does it matter if ctenophores 
evolved before sponges?


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Well, it does as you can see on the
 example of those three different trees.


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 So there are just three trees here that 
I have selected because they tell very 


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different stories, but there's a number 
of other trees that are highly supported


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 by recent literature. So 
let's look at this tree.


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 What does it tell us about 
animal evolution?


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Well, if ctenophores were the 
first animal lineage to evolve,


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then it either means that their nerves
 and muscles evolved independently


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 from all the other animals, which is rather 
interesting, or that sponges and also


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 placozoans had nerves and muscles, or 
their ancestors had nerves and muscles,


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 but they were later lost during evolution. 
So when we think about sponges and 


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having those ancestral features,
 actually they don't because they 


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are secondarily simplified.

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It also means that we have no
 idea how first animals looked like. 


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Unlikely they looked like ctenophores, 
which are complex predators, but we 


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basically are left with no understanding
 of how first animals looked like.


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How about this tree? Well this is a tree in 
which sponges are paraphyletic, meaning


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 that you would have to include all other 
animals with the sponges to be able to 


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talk about the monophyletic sponges.
 In yet another way, you can think of 


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all animals being derived sponges.

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In this, if this tree was true,
it would mean that the first animals


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must have looked like sponges. It basically 
means we are all sponges, just much more


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 complex than other sponges, and that
 the evolution of the complex cell types 


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and organs, nerves and muscles 
and brains happened only once.


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But what can we think about 
animal evolution if this tree is true?


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 Well, in this tree we have sponges being 
monophyletic, meaning they share an 


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ancestor that was not shared
 with all the other animals.


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And then you have placozoans that are
arriving later and then ctenophores being 


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close to cnidarians and
 then further on bilatarians.


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 So in this tree we have nerves and 
muscles evolving only once, here at 


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the base of bilatarians and coelenterates 


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 and then the first animals might have looked
like sponges but they didn't really have to.


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Can I tell you which of those trees is true? 
I can tell you that I kind of think that this is


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 probably the most likely tree, but I strongly 
suggest that you keep your eyes open 


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at the recent literature and make sure 
you understand that while a lot of others


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seem very convinced that they found 
the true tree, a couple of years later, 


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or a couple of months later, 
there might be another paper. 


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So keep your eyes open for the recent or 
newly emerging literature, because this is 


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an exciting topic that is really 
telling us or has potential to tell us


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 a lot about our own ancestry.

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Now

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we know that sponges are
interesting and important,


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but we also noticed that
 sponges are very diverse, 


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so one of those features of those phylogenies
is that more and more we are convinced that 


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sponges are monophyletic, meaning 
they share a single ancestor,


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but also that those relationships within 
sponges are shifting from time to time. 


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Now the tree of sponge classes that I like

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and I expect that this one will remain as
 a stable tree, something that people would 


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continue believing is this one. In this tree
 we have demosponges and hexactinellids 


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together. Demosponges include <i>Amphimedon </i>
<i>queenslandica</i>, a very important sponge model 


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system, and Hexactinellids or glass 
sponges, we will talk about that in a


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 moment, and then there is another pair 
of sponge classes, Homoscleromorphs


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with <i>Oscarella lobularis</i>, another important 
developmental biology model, and the


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calcareous sponges, about which we've 
been talking a lot during this module.


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So how are those sponges characterised? 
The demosponges generally have siliceous 


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spicules, some of them have an organic 
skeleton, and some of them have only 


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an organic skeleton rather than spicules. 
They have evolved into a variety of


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 different body forms, shapes, and sizes, 
and some even evolved to be carnivorous. 


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So instead of being filter feeders, 
they capture larger prey


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using modified spicules. There are some
 freshwater demosponges that are greatly 


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successful and present across the Earth 
and they are very diverse and the most 


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species-rich class of sponges.

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Hexactinellids that are closely related 
to them have siliceous spicules as well,


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 but they are very different than all the
 other sponges and majority of other 


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animals in that, while
 they are products of


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almost usual embryonic development with
 cell division and so on, the larvae become 


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syncytial and adults are syncytial, 
meaning that they don't have individual 


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cells, but they form multinucleated
large cells that are forming their bodies.


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They are often deepwater and therefore 
they are rather difficult as model systems.


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Now Homoscleromorphs are also 
characterised by siliceous spicules.


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 Some of them do not have spicules at all, 
but those that have spicules have siliceous 


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spicules, and some of them are very simple, 
they have extremely simple body plans


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 built only of epithelial cells.

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Finally, the calcareous sponges, which is 
my favourite group, have calcareous spicules.


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 They are built in a very similar way to the
 siliceous spicules of Homoscleromorphs,


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meaning they are very simple, but 
they are built of calcium carbonate,


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and they have all the different body plans, 
meaning asconoid, leuconoid, and syconoid, 


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despite the fact that they 
are rather a small class.


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Now

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there is a variety, as there is a variety of 
body plans of adults, there is also a variety 


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of larval types in sponges. The most 
diverse types of larvae are present in 


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the largest group, in the demosponges,
 and this is a beautiful, bullet-shaped 


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parenchymella larva of <i>Amphimedon</i>. The
 larvae of Hexactinellids are called trichimella


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There are very, very simple tiny larvae of 
cinctoblastula, called cinctoblastula larvae


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 of Homoscleromorph sponges, and in 
calcareous sponges there are two different 


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types of larvae, calciblastula, which are 
similar to cinctoblastula, and amphiblastula


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 that are characteristic to calcaraneon 
sponges. They're called amphiblastula 


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because they appeared to be built of
 two halves, hence the term "amphi",


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the anterior part that is built of ciliated 
cells and the posterior part that is built 


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of non-ciliated larger cells, and as they
 are one of the most simple larval types 


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 in sponges, we're going to be talking 
about how those larvae form during 


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embryonic development in the next chapter.

